PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g050420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 727aa    MW: 80090.3 Da    PI: 5.3815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g050420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.72.8e-20578674295
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ l +ed  ++r+W++++++  ++ks++y+l+ ++ +Fvk ngL+egDf+v++  ++ +++
  Csa15g050420.1 578 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISLAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVKTNGLQEGDFIVIY--SDvKCG 669
                     79*************************999999********7778*******99777777777777.********************..555999 PP

                     ..EEE CS
              B3  91 elvvk 95 
                     +++++
  Csa15g050420.1 670 KYLIR 674
                     88776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-28572684IPR015300DNA-binding pseudobarrel domain
CDDcd100152.78E-38575676No hitNo description
SuperFamilySSF1019362.94E-22576670IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-19577679IPR003340B3 DNA binding domain
PROSITE profilePS5086310.602577679IPR003340B3 DNA binding domain
PfamPF023623.2E-16578673IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MKGLHVAANG GDLAEDCGIL AGDADEAILM DGMDDVGREI WLDDHGGDHN HHHAHGDDDL  60
IVHHDPSLFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS SASSSSAASS STSSAASWAI  120
LRSDGEDPAP NQNQYGSGKC DDTSGALQST ASMEIPLDTS QGFGCGEGGG DCIDMMETFG  180
YMDLLDSNEF FDTSAIFSQD DDTQNPNLMD QTLERQQDQV VVPMLENNSG GDMQIMNSSL  240
EQDDDLATVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW  300
VQTNHLQRRR TTTITNNNLS YQQSFQQDPF QNPNPNNTNL IPPSDQTCFS PSTWVPTPQP  360
QQTFVSDPGF GYMPAPNYPP PPPEYLPILE SPPSWPPPPP QSGPMPHQQF PMPPNPQYNQ  420
FGEPTGFTGY NMNPYQYPYI PPGQMRDQRL LRLCSSATKE ARKKRMARQR RFLSHHHRHN  480
NNNNSTNQQN QNQVGETCAA VAPQLNPVAT NATGGTWMYW PNVPSVPPQL PPPLETQLPT  540
MDRAGSASAM PRQQVVPVPV PDRRQGWKPE KNLRFLLQKV LKQSDVGNLG RIVLPKKEAE  600
THLPELEARD GISLAMEDIG TSRVWNMRYR FWPNNKSRMY LLENTGDFVK TNGLQEGDFI  660
VIYSDVKCGK YLIRGVKVRQ PTGQKQEAPP SSVAATKRQN KSQRNINNNS PSASVVVASP  720
ASQTVK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX681410.0X68141.1 A.thaliana mRNA for ABI3 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466887.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like
SwissprotQ015930.0ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLD7L5710.0D7L571_ARALL; Putative uncharacterized protein
STRINGAT3G24650.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102802531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.10.0B3 family protein